Posted by
Daniel James White on
May 03, 2011; 7:37am
URL: http://imagej.273.s1.nabble.com/JAVA-error-messages-tp3684729p3684732.html
Hi Mark,
On May 3, 2011, at 6:00 AM, IMAGEJ automatic digest system wrote:
>
> Date: Mon, 2 May 2011 13:22:05 -0400
> From: "Mark Adelman (Work)" <
[hidden email]>
> Subject: Compiling Clarity for a Mac
>
> I am trying to expand the range of deconvolution tools available to me
> (ideally under ImageJ) for use with wide field fluorescence microscopy
> Z-series. It has been suggested to me that I try to compile Clarity (
http://cismm.cs.unc.edu/resources/software-manuals/clarity-deconvolution-library/
> ) for use on my MacBook.
No need to build it I think, and even if you did, I don tthink it has aGUI, so you would not really be able to use it.
Instead, get Image Surfer
http://imagesurfer.cs.unc.edu/which clarity is incorporated into
but its windows only as far as i can see...
> Am a total rookie when it comes to
> programming, compiling source code, etc. Have tried to follow the
> instructions for compiling Clarity using CMake, but I keep getting
> hung up with error messages, etc. Has anyone compiled Clarity for use
> on the Mac?
you would need to write your own GUI for it.
> Could someone point me to some instructions that will be
> intelligible to a beginner like me? I've done a lot of web browsing
> but none of the pages I've found seem to be pitched 'low enough' for
> me. Thanks in advance for any help.
I think you are probably not on a track that will pay off here.
DeconvolutionLab imageJ plugin from BIG at epfl in Laussanne should do everything that you need.
cheers
Dan
>
> Mark Adelman
Dr. Daniel James White BSc. (Hons.) PhD
Senior Microscopist / Image Visualisation, Processing and Analysis
Light Microscopy and Image Processing Facilities
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
01307 DRESDEN
Germany
+49 (0)15114966933 (German Mobile)
+49 (0)351 210 2627 (Work phone at MPI-CBG)
+49 (0)351 210 1078 (Fax MPI-CBG LMF)
http://www.bioimagexd.net BioImageXD
http://pacific.mpi-cbg.de Fiji - is just ImageJ (Batteries Included)
http://www.chalkie.org.uk Dan's Homepages
https://ifn.mpi-cbg.de Dresden Imaging Facility Network
dan (at) chalkie.org.uk
( white (at) mpi-cbg.de )