http://imagej.273.s1.nabble.com/JAVA-error-messages-tp3684729p3684736.html
> Piotr -
> There is no such file in the the main MM directory, nor in the mmplugins
> folder, nor in the plugins folder (this is the one with ImageJ plugins).
> But the folder for ParallelSpectralDecovolution (within plugins) has
> "parallelcolt-0.9.jar" and the folder for ParallelIterativeDecovolution
> (within plugins) has "parallelcolt-0.7.2.jar". Should I remove one (or
> both) of these? Move one (or both)? If so, which should I move/remove?
> Thanks!
> Mark
>
> From: Piotr Wendykier <
[hidden email]>
> Date: April 4, 2011 11:05:39 AM EDT
> To: ImageJ Interest Group <
[hidden email]>
> Cc: "Mark Adelman (Work)" <
[hidden email]>
> Subject: Re: JAVA error messages
> Mark,
> I'm the author of Parallel Spectral/Iterative Deconvolution plugins.
> There is something wrong with the configuration of your Micro-Manager 1.3.
> You can try to search for parallelcolt*.jar in the plugins directory.
> There should be only one file that matches this pattern.
> I hope this helps,
> Piotr
>
> On Mon, Apr 4, 2011 at 9:47 AM, Mark Adelman (Work)
> <
[hidden email]> wrote:
>
> Can someone give me some guidance regarding JAVA error messages I am
> getting? An example is included at the end of this message. Am learning to
> do some wide-field image deconvolution work. My platform is a MacBook (2.13
> GHz Intel Core 2 Duo, 4 GB MHz DDR2 SDRAM, OS 10.5.8). It is up-to-date on
> all Mac software updates (including the JAVA that Mac provides). I am
> running ImageJ 1.45d (under Micro-Manager 1.3). My knowledge of JAVA,
> programming, etc. is quite limited. Have been using an old confocal
> microscopy (MRC600) data set as a test sample. Have gotten some pretty nice
> results using the plugins by Bob Dougherty (in the Deconvolution folder) to
> generate a PSF and to do Iterative 3D deconvolutions, first of the confocal
> set and then of some actual wide field data sets. I was also able to run a
> number of the plugins in the DeconvolutionLab folder. When I tried Parallel
> Iterative Deconvolutions a number of one line JAVA error messages (about
> thrown threads, exceptions, etc....) showed up. I moved on to Parallel
> Spectral Deconvolutions and, no matter what I tried, got long error messages
> (see example below) and the program locked. Can someone suggest how to
> figure out what I'm doing wrong? Have looked at the Wiki page and done a
> number of Google searches, to no avail. Am just starting to read on JAVA
> and other programming issues, but am a LONG way from being able to resolve
> this without some guidance from people more knowledgeable than me. Thanks
> in advance for any help!
> Mark Adelman
>
> java.lang.NoSuchMethodError: cern.colt.matrix.tfloat.FloatMatrix3D.size()J
> at
> edu.emory.mathcs.restoretools.spectral.FloatCommon3D.assignPixelsToMatrix(Unknown
> Source)
> at
> edu.emory.mathcs.restoretools.spectral.AbstractFloatSpectralDeconvolver3D.<init>(Unknown
> Source)
> at
> edu.emory.mathcs.restoretools.spectral.tik.FloatReflexiveTikhonov3D.<init>(Unknown
> Source)
> at
> edu.emory.mathcs.restoretools.spectral.ParallelSpectralDeconvolution3D$MainPanel$DeconvolveButtonActionListener$1.run(Unknown
> Source)
> at java.lang.Thread.run(Thread.java:655)
>
>
>
>