Batch Analysis and ROIset saving

Posted by Sean Burke on Apr 13, 2011; 5:32pm
URL: http://imagej.273.s1.nabble.com/Batch-Analysis-and-ROIset-saving-tp3684918.html

Hello Everyone,
                    I am trying to find an easy way to do a batch analysis of 10 sets of images. Each set contains a DNA and Cytoplasmic channel. I would like to load each image, segment on the DNA Image, get the measurements for the nuclear intensity on the DNA and Cytoplasmic images, then save out the ROIset.zip with a custom or new name for the .zip file, and also save out the measurements as a csv, txt, or excel file. I am relatively new to Image J and wanted to know if anyone has any advice on this.
It would also be great if I could save out an image of the ROI mask as well.

Any help or advice would be greatly appreciated.


Sincerely,
Sean Burke