Re: Display 3D pseudocolor images with threhshold and transparency adjustment

Posted by Nathaniel Ryckman on Apr 14, 2011; 6:58pm
URL: http://imagej.273.s1.nabble.com/Display-3D-pseudocolor-images-with-threhshold-and-transparency-adjustment-tp3684926p3684927.html

I'm kind of confused at what the problem is. It sounds like you have a pretty good plan already?

Here is a Youtube video explaining how to use the 3D displayer:

http://www.youtube.com/watch?v=cD3Hc3NYkaU

If it doesn't help, could you try to explain the dilemma a little more? Examples would also help.

homedoc wrote

Hello to all,

We have a 3D stack of grayscale images. We would like to:
(1) Apply a LUT;
(2) Convert the resulting color display to either real RGB or real pseudocolor images; and
(3) Final goal: Display trhe result in color with variable transparency and threshold using the ImageJ 3D Viewer or perhaps another similar plug-in if one is available.

Any suggestions on how to achieve (3) will be greatly appreciated.

Thanks in advance,
Dr. Dave Tulbert