Re: Basic Image J Help

Posted by Nathaniel Ryckman on
URL: http://imagej.273.s1.nabble.com/Basic-Image-J-Help-tp3685011p3685015.html

The general process for detecting regions of interest (ROI's) is:
Threshold or Edge Detection -> Binarize -> Watershed/Fill/Etc -> Particle Analysis -> Measure

I personally think that this site has a good tutorial that gives you thorough examples without getting bogged down in detail:
http://www.macbiophotonics.ca/imagej/

Here's an e-mail that contains websites with more detailed documentation that I sent one of my co-workers who was interested in imageJ:

"Here is the official webpage for the original imageJ software documentation:
http://rsbweb.nih.gov/ij/docs/index.html

Here is a direct link to the important stuff. These are the "tools"
that I was talking about:
http://rsbweb.nih.gov/ij/docs/macro_reference_guide.pdf

Here is another direct link to more important stuff. This explains
functions, for loops, and other general programming concepts:
http://rsbweb.nih.gov/ij/developer/macro/macros.html

Here is another "flavor" of imageJ. There is additional documentation
that you can use from this site:
http://www.macbiophotonics.ca/imagej/

Here is another "flavor" of imageJ. There is also additional
documentation that you can use from this site:
http://pacific.mpi-cbg.de/wiki/index.php/Fiji"