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Re: Out of memory Issue

Posted by chenyanpei on Mar 29, 2011; 8:37pm
URL: http://imagej.273.s1.nabble.com/Re-Out-of-memory-Issue-tp3685216p3685219.html

use edit----options---memory to large the memory used by ImageJ.

2011/3/29 Pang, Zhengyu (GE Global Research) <[hidden email]>

> Michael,
>
> Yes.  It also works in my case when I re-run it. I don't think what
> happened before.
>
> By the way, using setBatchMode (true or false) reduced processing time
> by 22%
>
> Thanks.
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Michael Schmid
> Sent: Tuesday, March 29, 2011 2:39 PM
> To: [hidden email]
> Subject: Re: Out of memory Issue
>
> Hi Zhengyu,
>
> close() works in BatchMode - at least for me (using the daily build,
> ImageJ 1.45e11).
> E.g., there is no increase of memory usage with this:
>
> nImg=1000;
> setBatchMode(true);
> for (i=0; i<nImg; i++) {
> newImage("Untitled", "16-bit White", 2048, 2048, 1); run("Invert");
> showProgress(i/nImg); close(); } showProgress(1.0); setBatchMode("exit
> and display");
>
>
> Michael
> ________________________________________________________________
>
> On 29 Mar 2011, at 20:09, Pang, Zhengyu (GE Global Research) wrote:
>
> > Dear all,
> >
> > I need to open about 2000 images with each image about 8 Megabytes.
> > When
> > I use setBatchMode(false), I could use close() function after each
> > image opening  in order to save the memory. However, if I set the
> > setBatchMode(true), I could not close the active image as there is no
> > image open. Very quickly I got the error message telling me out of
> > memory ( I set 640 M for memory). In this case, could I still use
> > setBatchMode(true) and avoid memory issue? I think setBatchMode(true)
> > could give me the advantage of speed.
> >
> > Thanks,
> >
> > Zhengyu
> > Zhengyu Pang, Ph.D.
> > Biochemistry and Biological Engineering Laboratory Diagnostic and
> > Biomedical Technologies GE Global Research, K1-5B37A Niskayuna, NY
> > 12309
> > T: 518-387-4015
> > F: 518-387-7765
>



--
Chen Yanpei, phD
MssMat
Ecole Centrale Paris
Grande voie des vignes
92295 Châtenay Malabry
Paris, France