Re: Batch processing of .oib

Posted by Sam Albers on Mar 02, 2010; 7:02pm
URL: http://imagej.273.s1.nabble.com/Re-Batch-processing-of-oib-tp3685528p3685532.html

Hello all,

Sorry for cross posting with the confocal list but it was suggested that I
look for an answer to my problem here.

I am trying to batch process some OIB files into TIFF files. I have a bunch
of OIB file without a z-series but with 3 separate channels. I would like to
produce a single TIFF file for each OIB file (i.e. overlay 3 channels into
one). I can easily do this manually but I have hundred of images and was
wondering if there is a way to do this more efficiently.

Have anyone ever batch processed OIB files without a z-series into single
TIFF files?

I am running Ubuntu 9.10 and Imagej 1.43b and am using the latest version of
LOCI.

Thanks in advance!

Sam

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Sam Albers
Geography Program
University of Northern British Columbia
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