Re: IMAGEJ bundled with all plug ins request

Posted by Martin Höhne on Feb 07, 2011; 4:11pm
URL: http://imagej.273.s1.nabble.com/IMAGEJ-bundled-with-all-plug-ins-request-tp3685778p3685780.html

<quote author="Dan White">

you can get the plugins you want from MBF plugins collection .zip file
and add them to fiji plugins directory if you like.
The you get the benefits of Fiji,
and the plugins you want.

 
I tried this, but for me it doesn't work for all plugins. E.g. when trying to use the nucelus counter plugin (in MBF in: plugins>particle analysis>nucleus counter) I get the error message shown below from Fiji. Do I need to copy more that just the files from the plugin folder?

Thank you,
Martin
------------
here's the message:

java.lang.NoClassDefFoundError: Particle Analysis/Nucleus_Counter (wrong name: Nucleus_Counter)
        at java.lang.ClassLoader.defineClass1(Native Method)
        at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
        at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
        at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
        at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
        at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
        at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
        at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:140)
        at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:132)
        at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:127)
        at fiji.scripting.java.PlugInExecutor.tryRun(PlugInExecutor.java:122)
        at fiji.scripting.java.PlugInExecutor.tryRun(PlugInExecutor.java:102)
        at fiji.scripting.java.PlugInExecutor.run(PlugInExecutor.java:83)
        at fiji.scripting.java.PlugInExecutor.run(PlugInExecutor.java:77)
        at fiji.scripting.java.PlugInExecutor.run(PlugInExecutor.java:73)
        at fiji.scripting.java.Refresh_Javas.runPlugin(Refresh_Javas.java:339)
        at fiji.scripting.java.Refresh_Javas.compileAndRun(Refresh_Javas.java:126)
        at fiji.scripting.java.Refresh_Javas.runScript(Refresh_Javas.java:70)
        at common.RefreshScripts.run(RefreshScripts.java:266)
        at fiji.scripting.java.Refresh_Javas.run(Refresh_Javas.java:60)
        at ij.IJ.runUserPlugIn(IJ.java:183)
        at ij.IJ.runPlugIn(IJ.java:150)
        at ij.Executer.runCommand(Executer.java:124)
        at ij.Executer.run(Executer.java:61)
        at java.lang.Thread.run(Thread.java:619)