http://imagej.273.s1.nabble.com/Counting-empty-circles-tp3686043p3686050.html
I wonder if Feature Finder plugin can be automated somehow. I know the website says that it does not process stacks, but is there any other way to process many images somehow with Feature Finder? I have thousands to process.
> Hi Scott,
>
> you could try my 'Feature Finder' template matching plugin - I have put it online now:
>
http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:feature_finder:start>
> It seems that the features of interest (trichomes) can appear differently, with or without the bright ring? So you might combine the results obtained with different templates (prototypes).
> And there are lots of parameters to try: different brightness/contrast of the template, different ROI size in the template, and all the parameters of the dialog box...
>
> Michael
> ________________________________________________________________
>
>> Hello,
>>
>> I have images (see below) that have many glandular trichomes (the round
>> shiny objects) which I would like to quantify. I simply want to know how
>> many of them there are. It seems like I should be able to ask ImageJ to
>> count the number of these glandular trichomes, but I don't know how to do
>> this. I have tried many things already, but have hit a wall. The smaller
>> circles within each gland seem to be very consistent in size. I wonder if
>> this consistency in size can be used somehow. Thanks so much!
>>
>> Sincerely,
>>
>> Scott Chamberlain
>> Rice University, EEB Dept.
> <Feature_Finder_Test.jpg>