Re: Image Registration

Posted by Stephan Saalfeld on Dec 15, 2010; 9:37am
URL: http://imagej.273.s1.nabble.com/Image-Registration-tp3686174p3686175.html

Check the Fiji plugins

Register Virtual Stack Slices

http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices

and

Transform Virtual Stack Slices

http://pacific.mpi-cbg.de/wiki/index.php/Transform_Virtual_Stack_Slices

they incorporate bUnwarpJ, feature based registration and allow you to
save the estimated transformation and apply it to other images later.

Good luck,
Stephan


On Wed, 2010-12-15 at 11:24 +1100, James Burchfield wrote:

> I am looking for a simple way to measure the transformation
> required to achieve proper image registration between a set of
> reference images and then to apply this same transformation to a
> stack.
> I have been able to achieve fantastic results with bUnwarpJ on
> the reference image, but cannot work out how to apply this to
> other images.
> MultiStackReg works well on some data sets, but ideally i would
> like to apply exactly the same transformation to every image.
> Cheers,
> James