http://imagej.273.s1.nabble.com/Overlay-drawEllipse-for-stacks-tp3686465p3686468.html
On 10. Nov. 2010, at 01:27 , Guy Scott wrote:
> Hi Norbert, thank you for your reply. This plugin does provide the
> functionality I was looking for. I have encountered the following problem
> using this plugin:
>
> If I select a rectangular ROI with ImageJ and then use the Create Item from
> ROI command in the ObjectJ menu, a rectangular object is created as
> expected. However, when I try to use the function ojRoiToItem(); in my
> macro, a 'point' object seems to be created (not a rectangular one). I have
> included a .jpg file to show you what I mean:
>
>
http://img109.imageshack.us/img109/6068/objectj.jpg (the imagej ROI is still
> visible in the right image)
>
> (the left object is created using the command from the ObjectJ menu, the
> second object is created by calling ojRoiToItem(); from a macro)
>
> This is happening with a 1600x1600, 100 slice stack. Strangely, it doesn't
> happen on slice 1 (both Create Item from ROI from ObjectJ menu and
> ojRoiToItem() from macro produces the same object from the same rectangular
> ImageJ ROI) but happens for subsequent slices.
>
> I was having this problem using more complicated ROI which is why I decided
> to try with a rectangular ROI.
>
> Do you have any ideas what could be causing this problem?
>
> Thanks,
> Guy
>
>
> On Tue, Nov 9, 2010 at 4:26 AM, Norbert Vischer <
[hidden email]>wrote:
>
>> Hello Guy,
>> you could try ObjectJ, which allows non-destructive marking that is aware
>> of stack slices and hyperstacks, and bundles rois and other objects across
>> many images into a single project file.
>> Look at the tab "Tutorial": it mentiones (segmented) lines and points, but
>> also ROIs an polygons are supported.
>>
>> - An ImageJ roi can be converted into an ObjectJ Roi via menu
>> ObjectJ>Objects>Create Item From ROI.
>> - An ObjectJ ROI can be converted into an ImageJ roi via the "Object To
>> Roi" tool.
>>
>>
>> Under the tab "Examples", there is also a worked out example "Oocytes" that
>> includes a movie showing creation of automatic and manual non-destructive
>> ellipses that are stack-aware.
>>
>>
http://simon.bio.uva.nl/objectj>>
>>
>>
>>
>>> Hello, I have a simple question about overlaying geometric shapes. I am
>>> using Overlay.drawEllipse to draw circles in my macro. I have my images
>> in a
>>> stack and I would like to draw circles at different locations for every
>>> slice. However Overlay.drawEllipse doesn't seem to be slice specific
>> (every
>>> circle I draw appears in every slice of my stack). Is there a way I can
>>> overlay geometric objects in a slice specific way?
>>>
>>> Thanks,
>>> Guy
>>