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Re: Deltavision file format

Posted by ctrueden on Sep 13, 2010; 9:03pm
URL: http://imagej.273.s1.nabble.com/Deltavision-file-format-tp3686930p3686933.html

Hi Mike,

Thanks for the bug report. I'll second Dan's suggestion: if you email us
(the Bio-Formats developers) with a sample file, we can get it fixed. For
files ~15MB or less, email attachments are fine; for larger files let us
know if you need a place to upload data. You can find contact information
here: http://www.loci.wisc.edu/software/mailing-lists

Thanks,
Curtis

On Mon, Sep 13, 2010 at 10:57 AM, Michael Cundell <[hidden email]>wrote:

> I did contemplate whether to bother mentioning it or not given the fact
> that i can just do image > transform > flip vertically.  Just wanted to
> bring it to attention really.  Orientation doesnt really matter for
> fluorescence... however if you have differential interferance
> contrast/nomaski light images then the polarisation appears to come from the
> wrong direction when the file is opened in imageJ... so if you want to
> process images for presentation then you have to flip in imageJ at some
> point.
>
> Mike
>
> --------------------------------------------------
> From: "Aurelie Snyder" <[hidden email]>
> Sent: Sunday, September 12, 2010 8:43 PM
>
> To: <[hidden email]>
> Subject: Re: Deltavision file format
>
>  Yes, I have this same problem.  I don't use ImageJ as a rule so I have not
>> been much put out by it.  It would be a major pain if ImageJ is the program
>> of choice though.  Worth a request.
>> However, if you do all you .dv files in ImageJ what would be the
>> difference?
>>
>>
>> Aurelie Snyder
>>
>> ________________________________________
>> From: ImageJ Interest Group [[hidden email]] On Behalf Of Michael
>> Cundell [[hidden email]]
>> Sent: Sunday, September 12, 2010 9:39 AM
>> To: [hidden email]
>> Subject: Deltavision file format
>>
>> Hi,
>>
>> Just wondered whether anyone else had noticed the disconnect between the
>> deltavision microscopes SoftWorx software used to acquire/open/analyse
>> deltavision files and imageJ with respect to image orientation.  Whenever I
>> open a deltavision file, either with the ImageJ open command, or LOCI
>> bioformats importer, I have to do "edit > transform > flip vertically"
>> because imageJ opens my deltavision files upside down from how they are
>> displayed in Applied precisions SoftWorx software.
>>
>> Just wondered whether others also have this "problem" with deltavision
>> files... and whether its worth mentioning for a "fix"... or whether there is
>> a reason for opening deltavision files in this orientation?
>>
>> Thanks
>>
>> Mike
>>
>>
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> __________ Information from ESET Smart Security, version of virus signature
> database 5447 (20100913) __________
>
>
> The message was checked by ESET Smart Security.
>
> http://www.eset.com
>