Re: "Analyse particles" does never start for stack analysis

Posted by Aryeh Weiss on Aug 30, 2010; 7:07pm
URL: http://imagej.273.s1.nabble.com/Analyse-particles-does-never-start-for-stack-analysis-tp3686990p3686991.html

This sounds similar to something that happened to me with Fiji, but it
turned out to be a problem with the Java installation. Try downloading
and running JavaSUN instead of OpenJava. (I was using Suse 11.2, and
they note that for copyright reasons, they did not distribute JavaSun,
but you can download and install it with Yast).

--aryeh

On 8/30/10 5:01 PM, Jocelyn ETIENNE wrote:

> Dear everyone
>
> I'm using the "Analyse particle" function from the "Analyse" menu on images
> which I have thresholded.
> When doing it on a single image, this works fine ; however with a whole
> stack, ImageJ seems to give up after asking wether it should process the
> whole stack : the dialog "Process all N images?" appears, I click Yes,
> and... nothing ever happens.
>
> This doesn't work either with the stack from sample "Bat Cochlea Volume".
>
> However, if I duplicate just the first image from a stack, and run Analyse
> particles on it, I get the result and drawing of outline if I asked for it,
> for that single image. But trying to do the same duplicating a few images,
> it still stops after the dialog "Process all N images?", and I don't even
> get the "save measurements" dialog.
>
> The funny thing is that I used to do that in just the same way and got the
> analysis to work, on the same data. I've tried versions 1.43l, 1.43o and
> 1.43r on 2 different computers with different linux install on which this
> used to work. I've tried moving away my ~/.imagej configuration directory.
> To no avail...
>
> Any idea of what may be going wrong or what I may be doing wrong?
> Cheers.
> Jocelyn
>

--
Aryeh Weiss
School of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: [phone]