Re: Solved: "Analyse particles" does never start for stack analysis

Posted by Joce on Aug 31, 2010; 9:26am
URL: http://imagej.273.s1.nabble.com/Analyse-particles-does-never-start-for-stack-analysis-tp3686990p3686992.html

Thanks to all and to Aryeh especially -- it turns out that it was an
OpenJava problem. Funny since it used to work and I don't remember
having changer version for either OpenJava or ImageJ.

Best regards
Jocelyn

On Mon 30 Aug at 22:07 +0300, Aryeh Weiss <[hidden email]> wrote :

> This sounds similar to something that happened to me with Fiji, but it  
> turned out to be a problem with the Java installation. Try downloading  
> and running JavaSUN instead of OpenJava. (I was using Suse 11.2, and  
> they note that for copyright reasons, they did not distribute JavaSun,
> but you can download and install it with Yast).
>
> --aryeh
>
> On 8/30/10 5:01 PM, Jocelyn ETIENNE wrote:
>> Dear everyone
>>
>> I'm using the "Analyse particle" function from the "Analyse" menu on images
>> which I have thresholded.
>> When doing it on a single image, this works fine ; however with a whole
>> stack, ImageJ seems to give up after asking wether it should process the
>> whole stack : the dialog "Process all N images?" appears, I click Yes,
>> and... nothing ever happens.
>>
>> This doesn't work either with the stack from sample "Bat Cochlea Volume".
>>
>> However, if I duplicate just the first image from a stack, and run Analyse
>> particles on it, I get the result and drawing of outline if I asked for it,
>> for that single image. But trying to do the same duplicating a few images,
>> it still stops after the dialog "Process all N images?", and I don't even
>> get the "save measurements" dialog.
>>
>> The funny thing is that I used to do that in just the same way and got the
>> analysis to work, on the same data. I've tried versions 1.43l, 1.43o and
>> 1.43r on 2 different computers with different linux install on which this
>> used to work. I've tried moving away my ~/.imagej configuration directory.
>> To no avail...
>>
>> Any idea of what may be going wrong or what I may be doing wrong?
>> Cheers.
>> Jocelyn
>>
>
>
> --
> Aryeh Weiss
> School of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: [phone]

--
Jocelyn Etienne  ---  Research Fellow of the CNRS  ---  [phone]
Laboratoire de Spectrometrie Physique,  Université J. Fourier Grenoble I
[hidden email]     http://www-lsp.ujf-grenoble.fr/link/etienne