time series threshold

Posted by smh73 on Sep 02, 2010; 3:54pm
URL: http://imagej.273.s1.nabble.com/time-series-threshold-tp3687047.html

Hi,

I am trying to use multi-measure to measure all pixels above a certain threshold in a time series stack. The problem is that the threshold slider only allows you to set the maximum to the maximum pixel in the current slice. If there are brighter pixels in other stacks, they are excluded.  Even if I manually enter a larger treshold, it immediately reverts to the max for that slice.

I cannot use analyze particles (this could work with the "include holes" setting) because the pixels are not always contiguous.

Anyone know how to get around this?

Thanks!
Michael