Re: Tracing neurons in Sholl analysis

Posted by Mark Longair-2 on Jun 17, 2010; 8:26am
URL: http://imagej.273.s1.nabble.com/Tracing-neurons-in-Sholl-analysis-tp3687379p3687380.html

Cris R <[hidden email]> wrote:

>
> Dear List,
>
> I am trying to do Sholl analysis with the Sholl analysis plugin but I don't
> know which would be the best way of tracing the neurons. If you have any
> suggestion I would very much appreciate it.
>
> Thank you,
>
> Cris

Cris,

You could consider using Simple Neurite Tracer (bundled in Fiji)
for the tracing.  As it happens, I'm working at the moment on
adding Sholl analysis (a much requested feature!) [1] so
hopefully soon you'll be able to do everything with just that
plugin.

  http://pacific.mpi-cbg.de/wiki/index.php/Simple_Neurite_Tracer 

regards,
mark

  [1] http://longair.net/mark/sholl-work-in-progress.png