Re: MultiMeasure prompts user to click ok

Posted by dpoburko on Jun 24, 2010; 4:55pm
URL: http://imagej.273.s1.nabble.com/MultiMeasure-prompts-user-to-click-ok-tp3687622p3687623.html

Hi Sarah,

   If you run your script in BatchMode, it should suppress the
multi-measure prompt. Also, it's probably unneccessay to open and close
the ROI manager with each loop of the macro. You can simple delete all
the ROIs if you need to load a new set of ROIs.

Cheers,
Damon


On 6/24/2010 4:06 AM, Sarah W. wrote:

> Hi all,
>
> i am working on a macro that (consecutively) opens several folders, stacks
> the contained images and measures several rois throughout the stack.
> i use the multimeasure tool and it works fine for the first folder/stack.
> however, from the second folder on, before measuring it prompts me to
> confirm that i want to "measure all slices" and obtain "one row per slice"
> in the results table.
> i tried the macro recorder but it shows no way to set options to the
> roiManager("Multi Measure") command nor does it seem to pick up on my
> clicking "ok".
> is it possible to set the options of multimeasure in a way that accepts the
> settings of "measure all slices" and "one row per slice"?
> or, is it possible to avoid prompting altogether (perferrably disable it
> before saving the measurements and enabling it again afterwards)?
> any suggestions appreciated!
> thanks!
>
> sarah
>
> here is the code i used:
>
> DIR=getDirectory("Choose Directory");
>
> u=1;
> while (File.exists(DIR+"DS"+u+"\\")) {
>
> DIR_DS=DIR+"DS"+u+"\\";
> SLICES=getFileList(DIR_DS);
>
> for (i=0; i<SLICES.length; i++) {
> open(DIR_DS+SLICES[i]);
> }
>
> run("Images to Stack", "title=i0 keep");
>
> run("ROI Manager...");
> roiManager("Open", "C:\\temp\\myRoiSet.zip");
> run("Set Measurements...", "area mean standard modal min median
> redirect=None decimal=3");
> roiManager("Multi Measure");
>
> selectWindow("ROI Manager");
> run("Close");
>
>
> String.copyResults();
> selectWindow("Results");
> datei=DIR+"DS"+u+".xls";
> saveAs("Measurements", datei);
>
> selectWindow("Results");
> run("Close");
>
> run("Close All Without Saving");
>
> u++;
>
> }
>
>
>