Posted by
Aryeh Weiss on
Jul 07, 2010; 4:58am
URL: http://imagej.273.s1.nabble.com/wish-list-item-tp3687705p3687708.html
GCH wrote:
Thank you Gary and Gabriel. Both of these plugins can do what I need. I
have had a few problems and comments, with which perhaps you can assist,
and may happen to others on the list.
Gary's plugin is limited to shape descriptors (which is fine -- that is
the name and purpose of the plugin). I wonder if much of its
functionality can be integrated into Analyze>Set Measurements ? This
would provide a general way filter on any item that is measured.
One other thing -- I could only get Gary's plugin to work with dark
objects on a light background. I had dark background selected in the
threshold interface, and also I have the background color set to black
and foreground to white in the options menu. I must have missed a
different place where this much be set.
Gabriel's plugin can select anything in the results table, which is
nice, but if you need a range (ie low_limit<parameter<high_limit) then
you are limited to two parameters (please correct me if I
misunderstood). However, I am having trouble running it.
I downloaded the Morphology set and it resides in
$FIJI_HOME/plugins/Morphology,
When I try to run it, I get:
java.lang.NoClassDefFoundError: Morphology/Classify_Particles (wrong
name: Classify_Particles)
at java.lang.ClassLoader.defineClass1(Native Method)
This usually means that the plugin expects to be in a different
directory (but other plugins in the set run fine).
I can compile and run, in which case the plugin runs, and shows me the
interface. However, following "ok". I get this message:
Plugin or class not found: "scripting.java.Refresh_Javas"
(java.lang.ClassNoFOundException: scripting.java.Refresh_Javas)
So here I got stuck. Before I try dumping all the class files into the
top level plugins directory, I was hoping that the many people more
knowledgeable in Java than I would be able to provide a solution.
Some other details: I run Fiji, but the ij.jar is 1.44d16. OS is OSX 10.5.8.
I have not yet had a chance to check this, but are these plugins
"macro-friendly"?
Thanks again to both Gary and Gabriel for a very nice set of tools that
they provided.
--aryeh
--
Aryeh Weiss
School of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051