Re: Import of Leica LIF files

Posted by Melissa Linkert-2 on Jun 10, 2010; 1:31pm
URL: http://imagej.273.s1.nabble.com/Import-of-Leica-LIF-files-tp3687914p3687915.html

Hi Kristie,

Would you be willing to send the problematic LIF file to the
Bio-Formats developers so that we can see exactly where the problem
is?  I will send you the Bio-Formats FTP server information off-list,
in case you are interested in sending a file.

Regards,
-Melissa

On Thu, Jun 10, 2010 at 3:10 AM, kristiepy <[hidden email]> wrote:

> Dear ImageJ user,
>
> I have taken some Z-stacks using Leica LAS and save all Z-stack series in
> one experiment file in LIF format. I have been trying to use LOCI plugin in
> ImageJ to access those files. I managed to import the first 20 Z-stacks
> series with no problem. However, when I tried to import the rest of it,
> there is an error saying "range out of bounds" and would not load up the
> Z-stack ivideo at all. All Z-stacks in the experiment were taken at 12-bits
> and their settings are exactly the same. One thing I did notice is that the
> thumbnail of those problematic Z-stacks did not show up in the window for
> importation selection, i.e. the window that displays the thumnail of all
> data series within the LIF file such that you can select those you need to
> importat. However, their file names were still displayed. So I am thinking
> those files they can still be identified???
> I have installed the latest trunk build of LOCI and tried to restart the
> computer a few times to see whether it can be due to the lack of memory.
> Unfortunately, none of it helps.
> Any idea to solve this problem will be very much appreciated
>
> cheers
> Kristie
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