Re: 3D binaryreconstruct

Posted by Gabriel Landini on May 31, 2010; 11:43am
URL: http://imagej.273.s1.nabble.com/Re-3D-binaryreconstruct-tp3688134.html

On Monday 31 May 2010, you wrote:
> On Monday 31 May 2010, you wrote:
> > > I have a binary stack I need to clean (remove smallest particles). I
> > > simply apply a binary erosion then I would like to apply a
> > > binaryreconstruct. I use the G. Landini's Morphology tools but the
> > > binaryreconstruction does not work on stack.

Also, please note that this is not a truly 3D method.
That means that it will delete small objects regardless of whether these were
part of larger connected regions in the previous and next slices.
With a truly 3D method, the whole connected component should be considered for
3D reconstruction based on the seed created by a 3D erosion.

If your stack is just a collection of 2D images then of course it will work
fine, but there is no way of knowing this in advance for the plugin.

Regards,

Gabriel