Java Exceptions Thrown When a Leica Confocal Stack is Opened.

Posted by Gary G. Li on
URL: http://imagej.273.s1.nabble.com/Java-Exceptions-Thrown-When-a-Leica-Confocal-Stack-is-Opened-tp3688177.html

Greetings,

The following Java Exceptions were thrown when I was trying to open a Leica
Confocal stack.

What could be the cause?

Regards

Gary



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java.lang.ArrayIndexOutOfBoundsException: -1

                at java.util.Vector.get(Vector.java:696)

                at
loci.formats.ome.OMEXML200809Metadata.getImageNode(OMEXML200809Metadata.java:5675)

                at
loci.formats.ome.OMEXML200809Metadata.setImageCreationDate(OMEXML200809Metadata.java:3409)

                at
loci.formats.meta.FilterMetadata.setImageCreationDate(FilterMetadata.java:643)

                at
loci.formats.in.LeicaHandler.startElement(LeicaHandler.java:715)

                at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:501)

                at
com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:179)

                at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(XMLDocumentFragmentScannerImpl.java:1339)

                at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2747)

                at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648)

                at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)

                at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:807)

                at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)

                at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:107)

                at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)

                at
com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)

                at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)

                at javax.xml.parsers.SAXParser.parse(SAXParser.java:198)

                at loci.common.XMLTools.parseXML(XMLTools.java:277)

                at loci.common.XMLTools.parseXML(XMLTools.java:252)

                at
loci.formats.in.LIFReader.initMetadata(LIFReader.java:383)

                at loci.formats.in.LIFReader.initFile(LIFReader.java:315)

                at loci.formats.FormatReader.setId(FormatReader.java:901)

                at loci.plugins.importer.Importer.run(Importer.java:267)

                at loci.plugins.LociImporter.run(LociImporter.java:77)

                at ij.IJ.runUserPlugIn(IJ.java:175)

                at ij.IJ.runPlugIn(IJ.java:142)

                at ij.IJ.runPlugIn(IJ.java:131)

                at
HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:241)

                at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)

                at ij.IJ.runUserPlugIn(IJ.java:175)

                at ij.IJ.runPlugIn(IJ.java:142)

                at ij.IJ.runPlugIn(IJ.java:131)

                at
ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:337)

                at ij.io.Opener.openImage(Opener.java:245)

                at ij.io.Opener.openImage(Opener.java:268)

                at ij.io.Opener.open(Opener.java:124)

                at ij.io.Opener.open(Opener.java:63)

                at ij.plugin.Commands.run(Commands.java:23)

                at ij.IJ.runPlugIn(IJ.java:148)

                at ij.Executer.runCommand(Executer.java:121)

                at ij.Executer.run(Executer.java:58)

                at java.lang.Thread.run(Thread.java:619)