Re: Problem with "Orthogonal Views"

Posted by Rasband, Wayne (NIH/NIMH) [E] on
URL: http://imagej.273.s1.nabble.com/Problem-with-Orthogonal-Views-tp3688413p3688414.html

On May 1, 2010, at 11:28 AM, Benn, Douglas K. wrote:

> I wonder if anybody has the same problem with "Orthogonal Views"? When I do the following
>
> run("Image Sequence...", "open=[C:\\CBCT research\\04\\ID001122012.dcm] number=525 starting=1 increment=1 scale=100 file=[] or=[] sort");
> selectWindow("04");
> run("Orthogonal Views");
>
> It displays 3 windows - top left is axial slices, top right is saggital and bottom left coronal. However, the saggital images are flipped 90 degrees clockwise and the coronal 180 degrees.
>
> I can correct the orientation by using
>
> selectWindow("YZ 256");
> run("Rotate 90 Degrees Left");
> selectWindow("XZ 256");
> run("Rotate... ", "angle=180 grid=1 interpolation=Bilinear");
>
> However, as soon as I select the axial window to drag the planes cursor, the other windows flip again.
>
> Does anybody know how to correct this?

You can correct this in the 1.44a daily build by checking "Rotate YZ" and "Flip XZ" in the Edit>Options>DICOM dialog box.

-wayne