Re: Opening Zeiss LSM files in a macro
Posted by
jmutterer on
Mar 24, 2010; 5:10pm
URL: http://imagej.273.s1.nabble.com/Threshold-Selection-Macro-problem-tp3688803p3688805.html
Bertrand,
You can do that using the lsm macro extensions provided to the macro
language by the LSM Toolbox plugin. This is how it works:
run("Show LSMToolbox","ext"); // only once in your macro
path="c:\\test.lsm";
Ext.lsmOpen(path);
you can get the LSM Toolbox from:
http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:lsmtoolbox:startJerome
On Wed, Mar 24, 2010 at 5:13 PM, Bertrand Vernay <
[hidden email]>wrote:
> Dear all
>
> I do not manage to open .lsm5 files when running a macro using the
> open(path) command. The macro works fine with tiff files. ImageJ does open
> the LSM5 file without problem otherwise (drag and drop or File>Open ...).
>
> I'm sure it is an easy fix but beyond my limited macro programming skills.
>
> Thanks for your help
>
> I'm using the version 1.43r
>
> --
> Dr Bertrand Vernay
> Microscopy Senior Research Associate
> Developmental Biology Unit
> UCL Institute of Child Health
> 30 Guilford Street
> London WC1N 1EH, UK
>
> Tel : (+44) 020 7905 2224 (direct line)
> (+44) 020 7242 9789 (ICH switchboard)
>
> Fax: (+44) 020 7831 4366
>
> E-mail:
[hidden email]
>
>
>
http://www.ich.ucl.ac.uk/services_and_facilities/lab_services/confocal_micro> scopy_core_facility/index.html
>
>