Re: How to change ROI during a Macro?
Posted by Ninja Chris on Feb 22, 2010; 3:00pm
URL: http://imagej.273.s1.nabble.com/How-to-change-ROI-during-a-Macro-tp3689228p3689231.html
Hi Gargar, I'm working on some iterative code to process multiple ROIs within a single stack. The code
n = roiManager("count");
for (i=0; i<n; i++) {
roiManager("select", i);
will allow any subsequenty function to work on each ROI in succession. Eg:
sdir = getDirectory("choose source directory ");
n = roiManager("count");
for (i=0; i<n; i++) {
roiManager("select", i);
bee = "bee_"+i+"_";
ddir = sdir+bee;
File.makeDirectory(ddir);
run("Duplicate...", "title = ["+bee+"] duplicate range=1-3000");
run("Image Sequence... ", "format=TIFF name=["+bee+"] start=0 digits=4 save=["+ddir+"]");
close();
}
Hope this helps,
Chris