Re: Using ImageJ in another java pp in the existing jre, and batch mode on linux

Posted by Rasband, Wayne (NIH/NIMH) [E] on Feb 14, 2010; 5:29am
URL: http://imagej.273.s1.nabble.com/Using-ImageJ-in-another-java-pp-in-the-existing-jre-and-batch-mode-on-linux-tp3689390p3689394.html

On Feb 12, 2010, at 11:43 AM, Jared Hodge wrote:

> Hi, I'm new to ImageJ, so forgive me if this has been addressed before.
> I have a java application where I am wanting to use ImageJ.  I would
> think running it in my existing jre would be the most efficient way to
> process lots of images.  I mostly want to just be able to run macros,
> which I'm can do by calling ij.IJ runMacro.  The problem is I want them
> to run without any feedback to the monitor (similar to -batch, but
> actually processing the script I pass in), but runMacro displays a
> "results" GUI on the screen.  Also, if I ever construct an "ij.ImageJ"
> in my jre to display the GUI, all macros thereafter display even more
> stuff on the screen, even if I've closed the ImageJ GUI (until I restart
> my application).  Looking at the code a bit, it looks like the run
> method which shuts down the ImageJ GUI is not cleaning up the static
> references to itself in the IJ object.

These bugs are fixed in the 1.43r3 daily build.

-wayne