Posted by
BenTupper on
Jan 19, 2010; 1:33pm
URL: http://imagej.273.s1.nabble.com/Cells-to-Individual-Images-Plugin-tp3689682p3689685.html
Hi,
The macro below will create a subimage for each particle listed in the
results table. If you don't have a recent copy of ImageJ you'll have
to modify this line...
run("Specify...", "width=&bw height=&bh x=&bx y=&by");
to look something like this...
run("Specify...", "width="+bw+"height="+bh+"x="+bx+"y="+by");
Cheers,
Ben
run("Blobs (25K)");
origID = getImageID();
setAutoThreshold();
run("Set Measurements...", " bounding display redirect=blobs.gif
decimal=3");
run("Analyze Particles...", "size=0-Infinity circularity=0.00-1.00
show=Nothing clear display record");
for (i=0; i<nResults(); i++){
selectImage(origID);
bx = getResult("BX",i);
by = getResult("BY",i);
bw = getResult("Width",i);
bh = getResult("Height",i);
run("Specify...", "width=&bw height=&bh x=&bx y=&by");
run("Copy");
run("Internal Clipboard");
rename("sub-"+i);
}
On Jan 19, 2010, at 7:54 AM, gabejackson wrote:
> Hello!
>
> I was wondering if we have some sort of plugin to create individual
> images
> out of cells on a b/w thresholded image? Basically I just got an
> image from
> fluorescence microscopy and have the cells are seperated and would
> now like
> to create an image out of each cell instead of having them all on
> one image.
> Which algorithm or plugin?
>
> Many thanks in advance for any help,
>
> Greetings,
>
> Gabe
> --
> View this message in context:
http://n2.nabble.com/Cells-to-Individual-Images-Plugin-tp4419810p4419810.html> Sent from the ImageJ mailing list archive at Nabble.com.
Cheers,
Ben