Counting cells

Posted by hemangi on Dec 29, 2009; 7:21pm
URL: http://imagej.273.s1.nabble.com/3D-shape-descriptors-tp3689894p3689899.html

I am trying to count cells in an image by two ways and then co
Hi All,

I am trying to count cells in an image by two ways and then compare the results.
First, I used cell counter plugin and got all cells numbered.
Then, I used 'analyze particles'.
Can I get the summary window to show both:  ellipses from 'analyze particles' and numbers from the cell counter window?
I got it once, but can't get the similar result again!
Would someone please help me?

Thanks,
Hemangi.


 



________________________________
From: "Doube, Michael" <[hidden email]>
To: [hidden email]
Sent: Mon, December 28, 2009 11:40:18 AM
Subject: Re: 3D shape descriptors

Dear Hanna:

There is a Particle Counter plugin that might help.
http://rsb.info.nih.gov/ij/plugins/track/objects.html

but it goes a bit slow and doesn't do surfaces, so I'm working on making it a bit more 3D. Watch this space!
Or, check it out at github

http://github.com/mdoube/BoneJ/blob/master/src/org/doube/bonej/ParticleCounter.java

Mike
________________________________________
From: ImageJ Interest Group [[hidden email]] On Behalf Of Hanna_SN [[hidden email]]
Sent: 28 December 2009 08:46
To: [hidden email]
Subject: 3D shape descriptors

Dear all,

I am new to image j. I need to somehow characterize shape of particles
segmented from 3D image stacks. Unfortunately I can't find any suitable
plugin and I don't have a knowledge to write one myself. I would be very
grateful if someone could suggest me any plugin or a way to calculate shape
descriptors such as roundness or circularity for image stacks.

Best regards,
Hanna
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