Posted by
Albert Cardona-2 on
Dec 16, 2009; 2:46pm
URL: http://imagej.273.s1.nabble.com/image-registration-tp3690005p3690009.html
Hi Judie,
On Tue, Dec 15, 2009 at 9:26 PM, Judy Trogadis
<
[hidden email]> wrote:
> I am looking for a plugin for aligning serial sections. I came across a plugin - TurboReg, a collection of many CLASS files but can't find instructions for installation. It will not run by simply copying to a plugin folder. Same for StackReg (which requires TurboReg). Do other plugins exist?
For Fiji, which is an ImageJ package that includes a bundle of
plugins, there's the "Virtual Stack Slice Registration", that has the
ability to register in either linear and non-linear ways:
http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices> In the event that I do find such a plugin, what utilities are available for further processing an aligned stack? I am hoping to manually trace outlines, fully threshold inside the traces and use VolumeJ to reconstruct objects.
I suggest TrakEM2, also included in Fiji. See these video tutorials:
http://pacific.mpi-cbg.de/wiki/index.php/TrakEM2_tutorials... and this general short introductory page:
http://pacific.mpi-cbg.de/wiki/index.php/TrakEM2There's a documentation/manual page here:
http://t2.ini.uzh.ch/trakem2_manual.htmlTrakEM2 uses the same image registration library that "Register
Virtual Stack Slices" uses, so what the latter does, the former can do
as well, even for multiple sections consisting of multi-image tile
montages.
Albert
--
http://albert.rierol.net