Re: Multidimensional images

Posted by John Oreopoulos on Nov 18, 2009; 3:15pm
URL: http://imagej.273.s1.nabble.com/Multidimensional-images-tp3690412p3690414.html

Gareth,

I would convert your images into a hyperstack (a standard ImageJ  
feature now, not a special plugin), merge the two color channels and  
do a MIP/z-project. You will be able to scroll through the MIP in  
time with both colors present. Just be sure to select the right order  
of images for the hyperstack (xyzct, xyztc, etc.). I've heard that  
the plugin Image5D is also good for this kind of thing but I haven't  
used it.

John Oreopoulos


On 18-Nov-09, at 6:12 AM, Gareth Howell wrote:

> Dear list
> I have a series of 16-bit tiff images from a timecourse experiment.  
> They are two colour and at each time point 10 images were collected  
> in z.
> What is the best plugin to use for this type of data to produce an  
> MIP of the two colours over the timecourse and export as an AVI?
> Thanks
> Gareth