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Re: Stitching image stacks

Posted by Marta Rivera on Nov 18, 2009; 12:07pm
URL: http://imagej.273.s1.nabble.com/Stitching-image-stacks-tp3690418p3690421.html

Hi,

I think you need to try TrakEM2

http://www.ini.uzh.ch/~acardona/trakem2.html

Definitely you can do what you describe.

Enjoy!,

Marta Rivera-Alba

Instituto Cajal. CSIC.
Madrid. Spain

On Wed, Nov 18, 2009 at 12:52 PM, Antonia Lavorato <
[hidden email]> wrote:

> Thanks, but I need to overlap part of the image too.
> Any other suggestions?
> Maybe a combination of plugins?
> Antonia.
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Ashby, William Joseph
> Sent: November 18, 2009 11:37 AM
> To: [hidden email]
> Subject: Re: Stitching image stacks
>
> What you're looking for is the plugin "stack combiner"
>
> It's in the stack section of the imageJ plugins.
>
> -Will Ashby
> Vanderbilt University
>
> On Nov 18, 2009, at 5:03 AM, Antonia Lavorato wrote:
>
> > Hello everyone,
> > This is my first time posting I hope my question will be very clear
> and
> > someone will help me.
> > I am working on images stacks 512x512 each image (dicom format). I
> need
> > to stitch relative images (1st from stack A with 1st on stack B) and
> > obtain an image 1024x1024. Basically aligned each correspondent image
> > horizontally and eventually save the stitched stack as an image
> > sequence.
> > Any suggestions, I have tried to use TurboReg but the output is not
> what
> > I am after.
> > Thanks to all, Antonia.
> >
> > Antonia Lavorato | Principal Physicist| Medical Physics Department |
> > Bupa Cromwell Hospital, Cromwell Road, London, SW5 0TU
> > T: 0207 460 5619| F: 0207 460 5622| E:  E:
> > [hidden email]
> > <mailto:[hidden email]>
> >
> >
> >
> >
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> business of the Bupa Cromwell Hospital, are neither given nor endorsed by
> it.  Thank you
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> International Ltd.  Incorporated in London No. 1416977. Registered office:
> Cromwell Road, London SW5 0TU.
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