Re: Filtering images

Posted by Kota Miura on Nov 12, 2009; 12:14pm
URL: http://imagej.273.s1.nabble.com/Filtering-images-tp3690427p3690434.html

Hi Olukayode,

from the menu, select

Process -> Batch -> Macro...

then in the panel, do three things

1. "Input" field: select the folder where your 1000 images are

2. "Output" field:select a folder where you want to save processed images

3. paste your macro in the bottom field.

then click "process" button at the right-bottom corner.

you might need the latest version ImageJ.

cheers,
Kota

Olukayode Ajayi wrote:

> I've about 1000 images and my intention is filter them. Here is a sample of
> the original image: http://www.mypicx.com/11122009/Orignal_image/
>
> and the sample of the filtered image is
> this:http://www.mypicx.com/11122009/Filtered_image/
>
> Here is my macros:
> run("Brightness/Contrast...");
> setMinAndMax(0, 140);
> run("Apply LUT");
> run("Sigma Filter Plus", "radius=4 use=3 minimum=1");
> setAutoThreshold();
> //run("Threshold...");
> setThreshold(0, 168);
> run("Convert to Mask");
>
> However, if another 1000 images, I'll have to do another macros. How best I
> can go about do this imageJ which automatically gives me the filtered image.
>
> Regards,
>
>
>  

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Dr. Kota Miura

Scientist & IT Engineer
Centre for Molecular and Cellular Imaging,
European Molecular Biology Laboratory
Meyerhofstr. 1
69117 Heidelberg
GERMANY

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http://www.embl.org/cmci/
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