Re: Problem in opening a file

Posted by ctrueden on Nov 10, 2009; 6:20pm
URL: http://imagej.273.s1.nabble.com/Problem-in-opening-a-file-tp3690501p3690503.html

Hi Aparna,

It's not a memory issue; it's a bug in Bio-Formats. If you would be willing
to send us the file, we can look into fixing the problem. You can use our
FTP server (info sent in another email offline).

-Curtis

On Tue, Nov 10, 2009 at 10:51 AM, aparna sadananda <
[hidden email]> wrote:

> Hi all,
> I have a movie in oib format with a size of 24.5 MB. I have allotted a
> memory of 1500 MB to Image J. But still, this file does not open. instead a
> window opens up with the following:
>
>  java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 999
>  at java.util.Vector.get(Unknown Source)
>  at loci.formats.in.FV1000Reader.openBytes(FV1000Reader.java:163)
>  at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:140)
>  at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:113)
>  at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:187)
>  at loci.formats.DimensionSwapper.openBytes(DimensionSwapper.java:214)
>  at loci.plugins.Util.openProcessors(Util.java:104)
>  at loci.plugins.Importer.run(Importer.java:525)
>  at loci.plugins.LociImporter.run(LociImporter.java:72)
>  at ij.IJ.runUserPlugIn(IJ.java:177)
>  at ij.IJ.runPlugIn(IJ.java:143)
>  at ij.IJ.runPlugIn(IJ.java:131)
>  at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:253)
>  at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
>  at ij.IJ.runUserPlugIn(IJ.java:177)
>  at ij.IJ.runPlugIn(IJ.java:143)
>  at ij.IJ.runPlugIn(IJ.java:131)
>  at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:337)
>  at ij.io.Opener.openImage(Opener.java:245)
>  at ij.io.Opener.openImage(Opener.java:268)
>  at ij.io.Opener.open(Opener.java:124)
>  at ij.io.Opener.open(Opener.java:63)
>  at ij.plugin.Commands.run(Commands.java:23)
>  at ij.IJ.runPlugIn(IJ.java:150)
>  at ij.Executer.runCommand(Executer.java:120)
>  at ij.Executer.run(Executer.java:58)
>  at java.lang.Thread.run(Unknown Source)
> It is weird because another oib file of size 23.5 MB opens without any
> problem. This is a movie of 240 frames in 512* 512 pixel format. And the
> one
> that does not open is of 1200 frames but 100*24 pixel format.
>
> What could be going wrong? Many thanks in advance to anyone who helps me
> with this!
> Aparna
>