Re: Bug in Image5D

Posted by Robert Baer on Oct 13, 2009; 2:02pm
URL: http://imagej.273.s1.nabble.com/flattening-a-layer-from-z-stacks-of-thick-uneven-tissue-tp3690504p3690511.html

> - More serious, several slices of the RGB-stack show the same content, and
> some slices are even composed of different z-sections: the upper part from
> one, the lower part from another slice.

It would be helpful if you provide your OS, Java version, etc.  The problem
could reside in the plugin or in Java.  Is it reproducible on more than one
OS?

I don't know if it is related, but on Windows Vista I was having problems
with frames of my stacks fractionating into scambled pieces.  This problem
seemed to resolve itself when I installed the latest Java rather than the
release candidate that is installed with the downloaded ImageJ.  Based on
myexperience, an unsophisticated suggestion would be to at least try the
most recent Java for your OS.  I leave it to others to provide more direct
advice.

> My assumption is that maybe some parallel threads are not finished in the
> expected order and that this occurs only under heavy load, i.e. when large
> files are used. Unfortunately I do not know Java, so I hope that there is
> somebody on this list who might fix this otherwise so helpfull tool - or
> could provide other hints how I could reach my goal.
>
> Best regards
>
> Steffen
>