Posted by
Steffen Dietzel-2 on
Oct 13, 2009; 3:56pm
URL: http://imagej.273.s1.nabble.com/flattening-a-layer-from-z-stacks-of-thick-uneven-tissue-tp3690504p3690512.html
Sorry, should have done that right away:
OS is WinXP 32 bit.
I've tried it with ImageJ 1.43g - Java1.6.0_10
and 1.37s - Java 1.3.1_13.
The Image5D-plugin was reinstalled from the Website after the problem
occured, to make sure it is the latest version and not corrupted.
I think I had the same problem under Linux Fedora 64 bit - can't look
up the details of this system right now.
Concerning the Java-Versions, there are so many around (JDK, JRE, in
different flavors and versions that confused me) that I stuck to the
one that came with ImageJ. I also seem to remember that some time ago
some versions were incompatible with imageJ, and I just thought that
won't be any of those that come with the bundle...
Still, it's a possibility of course.
Steffen
At 16:02 13.10.2009, you wrote:
>>- More serious, several slices of the RGB-stack show the same
>>content, and some slices are even composed of different z-sections:
>>the upper part from one, the lower part from another slice.
>
>It would be helpful if you provide your OS, Java version, etc. The
>problem could reside in the plugin or in Java. Is it reproducible
>on more than one OS?
>
>I don't know if it is related, but on Windows Vista I was having
>problems with frames of my stacks fractionating into scambled
>pieces. This problem seemed to resolve itself when I installed the
>latest Java rather than the release candidate that is installed with
>the downloaded ImageJ. Based on myexperience, an unsophisticated
>suggestion would be to at least try the most recent Java for your
>OS. I leave it to others to provide more direct advice.
>
>
>>My assumption is that maybe some parallel threads are not finished
>>in the expected order and that this occurs only under heavy load,
>>i.e. when large files are used. Unfortunately I do not know Java,
>>so I hope that there is somebody on this list who might fix this
>>otherwise so helpfull tool - or could provide other hints how I
>>could reach my goal.
>>
>>Best regards
>>
>>Steffen