Posted by
Mario Faretta on
Oct 20, 2009; 10:32am
URL: http://imagej.273.s1.nabble.com/Import-array-of-images-as-ImageSequence-tp3690686p3690690.html
Dear Adam,
I have no a direct answer to your question but I can suggest a "ready to use
solution":
if you use the "hypervolume shuffler plugin" or the ImageJ5D plugin you can
import the entire sequence and then reorganize according to the parameters
coded in the name.
For example if you use image 5D virtual opener and you insert the following
parameters
3rd dimension> ch : number of channels
4th dimension> time: number of timepoints
5th dimension> z: number of Jobs
you got an hyperstack where you can browse through. The hypervolume shuffler
can also split the original stack into substacks.
Hope it helps
Mario
ps one little trick: if you choose z as dimension relative the timepoints (it
is only a label not a real correspondence). this way you can animate the stack
to observe the evolution of the timelapse for example
Adam Cliffe (
[hidden email]) wrote:
>
> I'm trying to write a macro which opens some of the images in a folder
> as an image sequence.
> i.e. the files are named
> Job1_t0_ch000.tif,
> Job1_t0_ch001.tif,
> Job1_t1_ch000.tif,
> Job1_t1_ch001.tif,
> Job2_t0_ch000.tif,
> Job2_t0_ch001.tif,
> Job2_t1_ch000.tif,
> Job2_t1_ch001.tif,
> etc...
>
> I would like the macro to open all the images with Job1 and ch001 in
> the title.
> I can't work out a way of imputing both of these parameters into the
> 'Import image sequence' dialog.
>
> Its easy to make an array of the files I'd like to open (startsWith
> Job1, endsWith "ch001.tif")
> but I can't work out how to open all these files as one tif stack (in
> my case there would be several hundred).
>
> Does anyone know a way of doing this?
>
> Thanks
>
> Adam
>
>
>
> Dr Adam Cliffe
> Research Scientist, Rorth Lab
>
> Institute of Molecular and Cell Biology
> 61 Biopolis Drive
> Proteos
> Singapore 138673
>
> tel: +65 6586 9731
>
>
>
>
>
>
>
>
>
> Note: This message may contain confidential information. If this Email/Fax has been sent
> to you by mistake, please notify the sender and delete it immediately. Thank you.
>
--
Mario Faretta
Department of Experimental Oncology
European Institute of Oncology
c/o IFOM-IEO Campus for Oncogenomics
via Adamello 16
20139 Milan
Italy
Phone: ++39-02574303054
email:
[hidden email]
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