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Re: Question on automated image analysis of tissue slices

Posted by Ignacio Arganda-Carreras on Sep 30, 2009; 7:39am
URL: http://imagej.273.s1.nabble.com/Question-on-automated-image-analysis-of-tissue-slices-tp3690976p3690978.html

Dear Walter,

To work with serial sections of any type, you should give a try to TrakEM2:

http://www.ini.uzh.ch/~acardona/trakem2.html

It includes methods for stitching, registering, segmenting, rendering...

ignacio

On Wed, Sep 30, 2009 at 2:54 AM, Prof. Walter Wolf <[hidden email]> wrote:

> Dear Colleagues:
>
> Could those of you who have used or are using ImageJ to automate tissue
> analysis please share that information with me? A commercial outfit is
> offering such a service, and I am trying to determine possible alternatives
> in order to share such information with members of the USC Biomedical
> Imaging Initiative.
>
> Thank you
>
> --
> Professor Walter Wolf, Ph.D. Distinguished Professor of Pharmaceutical
> Sciences
> Director, Pharmacokinetic Imaging Program
> Department of Pharmaceutical Sciences, School of Pharmacy
> Chair, Biomedical Imaging Science Initiative
> University of Southern California 1985 Zonal Ave., Los Angeles, CA
> 90089-9121
> E-Mail: [hidden email]
> Telephone: 323-442-1405
> Fax: 323-442-9804
> http://www.usc.edu/research/initiatives/bisi/
> http://www.macnis.org/
> http://www.usc.edu/schools/pharmacy/faculty_directory/detail.php?id=59
>



--
Ignacio Arganda-Carreras, Ph.D.
Institute of Neuroinformatics
Uni/ETH Zurich
Winterthurerstrasse 190
Bau 55
Zurich 8057
+41 44 63 53 031

Website: http://bioweb.cnb.csic.es/~iarganda/