Re: 3D volume rendering and measurement

Posted by Colin Poczatek on Sep 15, 2009; 12:42pm
URL: http://imagej.273.s1.nabble.com/3D-volume-rendering-and-measurement-tp3691087p3691090.html

A non-imagej option if you don't mind learning new software are the
applications from the University of Utah:
http://www.sci.utah.edu/software.html

Specifically Seg3D, SCIRun, and ImageVis3D.  I've been very happy with them.

A plugin to save in the correct format:
http://flybrain.stanford.edu/nrrd

Collin

Jean-Yves Tinevez wrote:

> On Sep 15, 2009, at 7:59 AM, Duleep Samuel wrote:
>
>> I am sure you would have seen
>> http://webscreen.ophth.uiowa.edu/bij/vr.htm, regards Samuel
>>
>
> Hi all,
> You can also try the 3D viewer:
>
> http://132.187.25.13/home/?category=Download&page=Viewer3D
>
> who does it on the fly "a la" Imaris. It is packaged and
> pre-configured in Fiji:
>
> http://pacific.mpi-cbg.de/wiki/index.php/Main_Page
>
> cheers
> jy
>
>
>> On Tue, Sep 15, 2009 at 11:11 AM, Joan Sim <[hidden email]> wrote:
>>> Dear all,
>>> I would like to use WCIF ImageJ to perform 3D volume rendering and
>>> calculation of the volume. May I know which plug-in or analysis module
>>> should I use after obtaining Z-stack immunostained images from confocal
>>> microscopy? Am I correct to say that I will have to import these
>>> images as
>>> tiff files, and not other formats, for analysis purposes?
>>>
>>> I would greatly appreciate any advices on this matter. Thank you!
>>>
>>> Best regards,
>>> Joan, PhD student
>>> Singapore
>>>
>
> --
> Jean-Yves Tinevez
> PFID - Imagopole
> Institut Pasteur
> 25-28, rue du Docteur Roux
> 75724 Paris cedex 15
> France
> tel: [phone]

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