Re: 3D volume rendering and measurement

Posted by Joan Sim on Sep 20, 2009; 3:57pm
URL: http://imagej.273.s1.nabble.com/3D-volume-rendering-and-measurement-tp3691087p3691091.html

Dear all,

Thank you very much for the useful advices provided. It is a good starting
point for me and I will be looking through them to see which is most
suitable for my applications.

Best wishes,
Joan

On Tue, Sep 15, 2009 at 8:42 PM, Colin Poczatek <
[hidden email]> wrote:

> A non-imagej option if you don't mind learning new software are the
> applications from the University of Utah:
> http://www.sci.utah.edu/software.html
>
> Specifically Seg3D, SCIRun, and ImageVis3D.  I've been very happy with
> them.
>
> A plugin to save in the correct format:
> http://flybrain.stanford.edu/nrrd
>
> Collin
>
> Jean-Yves Tinevez wrote:
> > On Sep 15, 2009, at 7:59 AM, Duleep Samuel wrote:
> >
> >> I am sure you would have seen
> >> http://webscreen.ophth.uiowa.edu/bij/vr.htm, regards Samuel
> >>
> >
> > Hi all,
> > You can also try the 3D viewer:
> >
> > http://132.187.25.13/home/?category=Download&page=Viewer3D
> >
> > who does it on the fly "a la" Imaris. It is packaged and
> > pre-configured in Fiji:
> >
> > http://pacific.mpi-cbg.de/wiki/index.php/Main_Page
> >
> > cheers
> > jy
> >
> >
> >> On Tue, Sep 15, 2009 at 11:11 AM, Joan Sim <[hidden email]> wrote:
> >>> Dear all,
> >>> I would like to use WCIF ImageJ to perform 3D volume rendering and
> >>> calculation of the volume. May I know which plug-in or analysis module
> >>> should I use after obtaining Z-stack immunostained images from confocal
> >>> microscopy? Am I correct to say that I will have to import these
> >>> images as
> >>> tiff files, and not other formats, for analysis purposes?
> >>>
> >>> I would greatly appreciate any advices on this matter. Thank you!
> >>>
> >>> Best regards,
> >>> Joan, PhD student
> >>> Singapore
> >>>
> >
> > --
> > Jean-Yves Tinevez
> > PFID - Imagopole
> > Institut Pasteur
> > 25-28, rue du Docteur Roux
> > 75724 Paris cedex 15
> > France
> > tel: [phone]
>
>
>
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