Re: Plugin for conversion from MRC to TIFF

Posted by dscho on
URL: http://imagej.273.s1.nabble.com/Plugin-for-conversion-from-MRC-to-TIFF-tp3691335p3691341.html

Hi,

On Mon, 31 Aug 2009, Curtis Rueden wrote:

> You can use the "bfconvert" Bio-Formats command line tool to convert an MRC
> file into a TIFF stack. See:
>
>   http://www.loci.wisc.edu/ome/formats-tools.html
>   http://www.farsight-toolkit.org/wiki/FARSIGHT_Tutorials/Bio-Formats
>
> If you want to convert each image plane to a separate file, you would need
> to use an ImageJ macro, or write some Java code.

If you want to do it with a macro, this tutorial might be helpful:

http://pacific.mpi-cbg.de/wiki/index.php/How_to_apply_a_common_operation_to_a_complete_directory

Ciao,
Johannes