Posted by
David Gene Morgan on
Aug 19, 2009; 6:48pm
URL: http://imagej.273.s1.nabble.com/macro-batch-issue-tp3691446.html
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Hi,
I've written a macro that strips the metadata out of Digital Micrograph
image. I use a self-written wrapper to start imageJ and the following
command works well:
imageJ -macro getMetaData FILE.dm3
I have a second macro that should work in batch mode (no GUI, so no open
windows) but when I run it
imageJ -batch getMetaDataBatch FILE.dm3
I get an error that indicates an inability to find/use the plugin to
read DM3 files. This seems to be specific for the DM3 plugin since I
can run the batch process using a few other "more standard" file types.
I may be able to solve this by mucking about with the java environment,
but I figure someone else may know exactly what to do. Thanks for any help.
- --
David Gene Morgan
cryoEM Facility
005B Simon Hall
Indiana University Bloomington
812 856 1457 (office)
812 856 3221 (EM lab)
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