How to make the plugin "Colocalisation Threshold" recordable in macro?
Posted by Ales Kladnik on Aug 05, 2009; 2:27pm
URL: http://imagej.273.s1.nabble.com/How-to-make-the-plugin-Colocalisation-Threshold-recordable-in-macro-tp3691546.html
Hello!
I'm trying to automate colocalization analysis with the "Colocalisation Threshold" plugin by Tony Collins, however, when I try to record a macro command for calling this plugin, I get "Duplicate keyword" errors regarding the keyword "channel".
this is the command that gets recorded:
run("Colocalisation Threshold", "channel=Eqt_celica1_R.tif channel=Eqt_celica1_G.tif use=[Channel 1] channel=[Red : Green] show");
I see there are multiple settings all labeled with "channel" - so my question is: is there a way to figure out the correct variable names, and pass them to the plugin from a macro?
-Ales Kladnik