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Re: AnalyzeSkeleton 2D 3D - number of skeletons

Posted by Ignacio Arganda-Carreras on Jul 17, 2009; 5:21pm
URL: http://imagej.273.s1.nabble.com/Re-AnalyzeSkeleton-2D-3D-number-of-skeletons-tp3691738p3691740.html

David,

You are right, i just updated the wiki site with the new value (215-1
skeletons).

I have a debugging version of the code that displays every different
skeleton in a different color. If you need something like that, please, just
let me know.

Thanks for the feedback!

ignacio

On Fri, Jul 17, 2009 at 1:12 PM, David Webster <[hidden email]>wrote:

> Dan,
>
> The ImageJ documentation says 255 skeletons, and the Fiji documentations
> doesn't say. When I ran Maringa's example on the old imageJ (i.e feb 2009)
> version I got 1096 skeletons, but it took *FOREVER *(well nearly) to
> produce
> the results table and the log table. When I ran the Fiji version, it was
> much faster but only produced a single results table entry and no log
> table.
> From past experience, I think a break down by skeleton is desirable. It
> would probably also be useful to have a information that would allow one to
> indentify a skeletons at the image level. Unfortunately, I am a novice Java
> programmer so I can't help Ignacio by doing these things (at leat for now).
>
> david
>
> On Fri, Jul 17, 2009 at 12:02 AM, Daniel James White <[hidden email]
> >wrote:
>
> > Hi Ignacio,
> >
> > is there a (256?) limit to the number of skeletons that can be analysed
> > in the analyse skeletons 2D 3D ?
> >
> > Senthil has more than that per image in some cases...
> >
> > cheers
> >
> > Dan
> >
> >
> > On Jul 17, 2009, at 6:00 AM, IMAGEJ automatic digest system wrote:
> >
> > Date:    Wed, 15 Jul 2009 22:35:17 -0700
> >> From:    David Webster <[hidden email]>
> >> Subject: Re: AnalyzeSkeleton, problem solved
> >>
> >> Ignacio,
> >>
> >> As it turns out, the problem was caused by closing the "Tagged Skeleton"
> >> image before the Results table was displayed. There is quite a delay
> >> between
> >> image and results display, which is also why I didn't think it was being
> >> displayed.
> >>
> >> So, al problems solved.
> >>
> >> David
> >>
> >
> > Dr. Daniel James White BSc. (Hons.) PhD
> > Senior Microscopist / Image Visualisation, Processing and Analysis
> > Light Microscopy and Image Processing Facilities
> > Max Planck Institute of Molecular Cell Biology and Genetics
> > Pfotenhauerstrasse 108
> > 01307 DRESDEN
> > Germany
> >
> > +49 (0)15114966933 (German Mobile)
> > +49  (0)351 210 2627 (Work phone at MPI-CBG)
> > +49  (0)351 210 1078 (Fax MPI-CBG LMF)
> >
> > http://www.bioimagexd.net       BioImageXD
> > http://pacific.mpi-cbg.de               Fiji is just ImageJ - Batteries
> > Included
> > http://www.chalkie.org.uk
> > [hidden email]
> > ( [hidden email] )
> >
>



--
Ignacio Arganda-Carreras, Ph.D.
Institute of Neuroinformatics
Uni/ETH Zurich
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Website: http://arantxa.ii.uam.es/~iarganda/index_EN.html