Re: Analyze Skeleton-plugin suddenly stopped working!

Posted by David Webster on Jul 16, 2009; 8:25pm
URL: http://imagej.273.s1.nabble.com/Analyze-Skeleton-plugin-suddenly-stopped-working-tp3691758p3691761.html

Martina,

Did you get your questions answwered OK? I noticed that the Fiji version of
analyzeskeleton_.jar doesn't produce a results file that is broken down by
skeleton. Also, on your test image the it may take some time to produce the
results file (after display of the tagged skeleton image). Also, your test
image isn't binary, so you need to run it thru "Make Binary" and Skeletonize
before ruiing Analyze Skeleton.

David

On Wed, Jul 15, 2009 at 2:27 AM, maringa <[hidden email]>wrote:

> Hi David,
>
> I e-mailed the author of the plugin, and he updated it but it's still not
> working.
> I updated my fiji last week and I also updated ImageJ to 1.42q
> running analyzeskeleton_.jar downloaded 07/13/09
>
> Here is my input image: 8bit skeletonized neurite image:
> http://img27.imageshack.us/img27/9027/tujiskeleton.jpg
>
> Martina
> ________________________________
> Från: David Webster (via Nabble) [[hidden email]<ml-user%[hidden email]>
> ]
> Skickat: den 13 juli 2009 23:16
> Till: Martina A K Johansson
> Ämne: Re: Analyze Skeleton-plugin suddenly stopped working!
>
> All,
>
> I can run  Analyze-skeleton  with no problems as follows:
>
> run("Blobs (25K)");
> run("Make Binary");
> run("Skeletonize (2D/3D)");
> run("Analyze Skeleton (2D/3D)");
>
> I am using ImageJ 1.43b and analyzeskeleton_.jar downloaded on 2/22/09.
> What
> is your setup?
>
> David Webster
>
> On Sat, Jul 11, 2009 at 10:42 PM, maringa <martinaj@...<
> http://n2.nabble.com/user/SendEmail.jtp?type=node&node=3251808&i=0>>wrote:
>
> > Hi again,
> >
> > My ImageJ programme is done, but now a really annoying error has occured!
> > Whenever I use
> > the Analyze-skeleton plugin it shows an error message (looks like this:
> > http://img200.imageshack.us/img200/8877/errorlma.jpg)
> >
> > I've tried the following:
> > - update Fiji
> > - uninstall and reinstall fiji
> > - install ImageJ again
> >
> > It has nothing to do with my macro, no matter how I use Analyze Skeleton
> I
> > get the same error message. How can it suddenly be like this?
> > My macro really need to use analyse-skeleton so this is very annoying!
> >
> > Thanks for your help :)
> >
> >
> > --
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> >
>
>
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