Re: Analyze Skeleton-plugin suddenly stopped working!

Posted by David Webster on Jul 16, 2009; 1:21am
URL: http://imagej.273.s1.nabble.com/Analyze-Skeleton-plugin-suddenly-stopped-working-tp3691758p3691766.html

Ignacio,

Our emails crossed in the mail. Your new version works fine.

I am curious about the limitation to 255 skeletons/image. Is this imposed by
the results table?

David

On Wed, Jul 15, 2009 at 3:41 PM, Ignacio Arganda
<[hidden email]>wrote:

> Hello David,
>
> Did you use the version I just uploaded?
>
> ignacio
>
> On Wed, Jul 15, 2009 at 3:14 PM, David Webster <[hidden email]
> >wrote:
>
> > All,
> >
> > I got the current (imageJ wiki version) AnalyzeSkeleton_.java "un-jar'ed"
> > from AnalyzeSkeleton_.jar and did the "Compile and Run". The first
> compile
> > gives me this funny error message. "error: error reading
> > C:\PROGRA~1\ImageJ\plugins\analyzeskeletonNEW.jar; null" Then I compiled
> it
> > again and got some warnings but the compile works.
> >
> > I've also noticed that neither the old or new versions will return a
> > results
> > table on Maringa's example image. But the do so on my example using
> > blobs.jpg.
> >
> > The apparent confusion highlites my hesitancy to use FIJI as then
> > differences between it and imageJ aren't obvious to me.
> >
> > David Webster
> >
> >
> > On Wed, Jul 15, 2009 at 10:44 AM, Johannes Schindelin <
> > [hidden email]> wrote:
> >
> > > Hi,
> > >
> > > On Wed, 15 Jul 2009, Wayne Rasband wrote:
> > >
> > > > On Jul 15, 2009, at 5:27 AM, maringa wrote:
> > > >
> > > > >I e-mailed the author of the plugin, and he updated it but it's
> still
> > > > >not working. I updated my fiji last week and I also updated ImageJ
> to
> > > > >1.42q running analyzeskeleton_.jar downloaded 07/13/09
> > > > >
> > > > >Here is my input image: 8bit skeletonized neurite image:
> > > > >http://img27.imageshack.us/img27/9027/tujiskeleton.jpg
> > > >
> > > > The analyzeskeleton_.jar file is corrupted.
> > >
> > > Now I finally get it.  Y'all are talking about the analyzeskeleton_.jar
> > > from the ImageJ Docu Wiki (which is also referenced from the Fiji
> Wiki).
> > > After downloading that, I can verify that yes, it is not a valid .jar
> > > file.
> > >
> > > However, I was always talking about the AnalyzeSkeleton_.jar you get
> via
> > > Help>Update Fiji (you have to run Fiji for this, of course).  This is
> not
> > > corrupted.
> > >
> > > Ignacio, care to upload a correct one to the ImageJ Docu Wiki?
> > >
> > > Ciao,
> > > Dscho
> > >
> >
>
>
>
> --
> Ignacio Arganda-Carreras, Ph.D.
> Institute of Neuroinformatics
> Uni/ETH Zurich
> Winterthurerstrasse 190
> Bau 55
> Zurich 8057
> [phone]
>
> Website: http://arantxa.ii.uam.es/~iarganda/index_EN.html
>