Bio-formats export of hyperstack

Posted by Glen MacDonald-2 on
URL: http://imagej.273.s1.nabble.com/Bio-formats-export-of-hyperstack-tp3692658.html

Hello,
I've written a simple macro that provides the user a means to choose  
the order in which confocal channels are merged, then uses the Loci  
plugin to import an Olympus OIF file as separate channels and merge  
them into a hyperstack.  Attempting to use the Bio-Formats exporter to  
save the 16-bit, 3 channel Hyperstack as ICS or ome.tiff freezes with  
an error message.  this also occurs if the hyperstack is converted to  
RGB and attempted to export as TIFF.  However the RGB stack will save  
with 'File/Save as...'/ TIFF.

the error message begins with
"SamplesPerPixel #0 is null:
loci.formats.FormatException: SamplesPerPixel #0 is null
........."

any suggestions on how to avoid this?

Thanks,
Glen


Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]

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