Re: New plugin: auto threshold

Posted by Gabriel Landini on Apr 11, 2009; 4:13pm
URL: http://imagej.273.s1.nabble.com/New-plugin-auto-threshold-tp3692969p3692971.html

On Saturday 11 April 2009, Roberto Sotto-Maior Fortes de Oliveira wrote:
> Your work will really help me and anyone deciding about what thresolding
> method use.
> For next implementation, I would like to suggest an option to make the
> montage in a vertical fashion helping vertical monitor users.

There is version 1.3 for download (same link) which introduces global
threshold for stacks based on the accumulated stack histogram.

The aspect ratio is simple to fix. If you download the jar file, you can
extract (jar files are zip files) the java source and change the line:

mm.makeMontage( imp3, 5, 3, 1.0, 1, (ml-1), 1, 0, true);

Specifically numbers 5 (rows) and 3 (columns) for any other combination which
multiplied is at least 13.

For instance:
mm.makeMontage( imp3, 3, 5, 1.0, 1, (ml-1), 1, 0, true); would make the
montage with a vertical aspect ratio).
You just compile the java file and add it to the jar file.
I hope it helps.

Cheers

Gabriel