Posted by
Joachim Wesner on
Mar 20, 2009; 3:15pm
URL: http://imagej.273.s1.nabble.com/Images-to-stack-in-batch-mode-tp3693222p3693227.html
Hi list,
I seem to remember there were related entries in the list (archives) here,
but it seems I cannot find the right entries/keyword in the moment....
I´m working on a plugin that seems to show erratic behaviour on my new fast
dual core system. I think I "nailed" the problem down to the
point where I call an external plugin to do some extra processing on an
internal image that I create (and usually close again after).
The task here is to create a circular ROI from interferometer mask data +
some hole filling
.
.
.
bProc.dilate(); bProc.dilate();
bProc.erode(); bProc.erode();
ImagePlus impb = new ImagePlus("Zygo phase mask - "+file,
bProc);
impb.updateAndRepaintWindow();
impb.show();
// IJ.wait(200);
createSelectionFromMask(bProc);
.
.
.
.
void createSelectionFromMask(ImageProcessor ip) {
ip.setThreshold(0, 0, ImageProcessor.NO_LUT_UPDATE);
IJ.runPlugIn("ij.plugin.filter.ThresholdToSelection", "");
}
It only works if I really shortly "show" the ImagePlus impb before calling
createSelectionFromMask,, OK, I can accept that, as it´s another
plugin, that I use.
HOWEVER,
Without the added IJ.wait it seems that often on the new fast, dual core
system, the other plugin already runs *BEFORE* the image is "shown", so it
will cease to work.
Inserting the short delay of 200-500 ms seems to cure the problem for the
moment, but I wonder if there is a better solution!?
Sincerely
Joachim
Leica Microsystems CMS GmbH | GmbH mit Sitz in Wetzlar | Amtsgericht
Wetzlar HRB 2432
Geschäftsführer: Dr. Stefan Traeger | Dr. Wolf-Otto Reuter | Dr. David Roy
Martyr | Colin Davis
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