Re: image J nd stack builder plugin

Posted by ctrueden on Feb 16, 2009; 9:43pm
URL: http://imagej.273.s1.nabble.com/image-J-nd-stack-builder-plugin-tp3693700p3693701.html

Hi Vinay,

Any solutions other than the nd stack builder?
>>
>
Bio-Formats includes support for Metamorph's ND format. Give it a shot and
let us know if you run into any problems. We are very interested in
non-working sample data, especially if Metamorph has been changing the ND
format lately.

http://www.loci.wisc.edu/ome/formats-imagej.html

Cheers,
Curtis

On Mon, Feb 16, 2009 at 2:44 PM, Vinay Singh <[hidden email]> wrote:

>
>> HI I am using the nd Stack builder plugin on a data set collected with
>> metamorph Multidimensional acquisition. Image J 1.41 just says done and does
>> not make the z projected stack. The data set is a 2 color 15 Z stacks time
>> lapse experiment.
>>  I am using a Power Book G4 1.67Ghz 2GB RAM running leopard. The same data
>> set works fine on PC's. I could use the plugin earlier when I was just doing
>> one color  (1GB Total RAM) and everything worked fine. Tried it on the new
>> Mac Pro unibody with 2.4Ghz 4GB RAM and have the same problem. I have tried
>> reducing the number of time points with the same result. I have increased
>> the memory to 75% of the real RAM and it still does not work. One difference
>> is that the new file names are longer when you use 2 colors but Leopard
>> should be able to deal with 255 characters in file names unlike older OS
>> which would only  take 35 characters.
>>
>> Any solutions other than the nd stack builder? Does anyone else have the
>> same problem. I am using Java 1.5 or that is what Image J says.
>>
>> vinay
>>
>>
>>
>>
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