Re: XYZT visualization

Posted by Michael Doube on Jan 22, 2009; 12:36pm
URL: http://imagej.273.s1.nabble.com/Copy-volume-from-within-stack-to-new-stack-tp3693965p3693970.html

Bene,

Are you posting new versions of the ImageJ 3D viewer to the neurofly page
http://132.187.25.13/home/?category=Download&page=Viewer3D

Or somewhere else?

Mike

Benjamin Schmid wrote:

> Hi Aryeh,
>
>> Thank you for your reply. This works, although getting the files written
>> out is a bit of a pain. It can be done in a macro, but the names have to
>> be parsed to get the order correct. What would really be nice is if one
>> could load a hyperstack directly into the volume viewer. That would save
>> a lot of bookkeeping.
>
> I just uploaded a new version of the 3D viewer. Again following -> File
> -> Load 4D data, you can load 4D data. You can now eiter specify a
> folder which contains your 3D images, or a file containing a hyperstack.
>
> If you select a folder, first all filenames are sorted alphabetically,
> and then each file is loaded, if possible (if not, it's omitted).
>
> That's the first time I used hyperstacks, so it may well be that I've
> done something stupid. Until now, the specified hyperstack is expected
> to have only one channel, and that its frames correspond to the time points.
> Let me know if it works.
>
> Cheers,
> Benjamin

--
Dr Michael Doube  BPhil BVSc PhD MRCVS
Research Associate
Department of Bioengineering
Imperial College London
South Kensington Campus
London  SW7 2AZ
United Kingdom