bUnwarpJ update, tutorial, presentation and macro for stack registration

Posted by Ignacio Arganda Carreras on Nov 10, 2008; 6:22pm
URL: http://imagej.273.s1.nabble.com/bUnwarpJ-update-tutorial-presentation-and-macro-for-stack-registration-tp3694564.html

Dear all,

I just updated bUnwarpJ (consistent elastic image registration) to fix a
couple of bugs:

- For the sake of clarification, changed "Divergency" to "Divergence" in
all files. Note here that the macros need to be updated to the new
parameter name "divergence_weight"
- Corrected optimal final values to include weight, i.e. optimal value =
final error value * weight.

The most up-to-date JAR file can be downloaded here:

http://biocomp.cnb.csic.es/~iarganda/bUnwarpJ/index.html#Download


I uploaded too the presentation I gave at the ImageJ User & Developer
Conference 2008, where I informally described the parameters of the plugin:

http://biocomp.cnb.csic.es/~iarganda/bUnwarpJ/downloads/bUnwarpJ_ImageJ_Conf_2008_presentation.pdf


Marta Rivera-Alba helped me to create a macro so an entire stack of
images is registered taking the first image as reference:

http://imagejdocu.tudor.lu/doku.php?id=macro:affine_consistent_elastic_registration

Download at
http://biocomp.cnb.csic.es/~iarganda/bUnwarpJ/downloads/AffineConsistentElasticRegistration.txt


Finally, i also released a basic video tutorial, reachable at the wiki:

http://imagejdocu.tudor.lu/doku.php?id=video:aligning:bunwarpj_basic_tutorial

Best regards!

ignacio

--
Ignacio Arganda-Carreras
Escuela Politécnica Superior
Laboratorio B-408     Phone: [phone]
Universidad Autónoma de Madrid
Ctra. de Colmenar Viejo, Km. 15
Madrid 28049,  Spain

E-mail: [hidden email]
Website: http://www.ii.uam.es/~iarganda